NECAT: Nanopore Error Correction and Assembly Tools

Github: https://github.com/luofenglab/NECAT

MECAT: Fast Mapping, Error Correction and Assembly Tools for SMS reads

GitHub: https://github.com/luofenglab/MECAT

DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning

GitHub: https://github.com/luofenglab/deepsignal

Constructing Gene Co-expression Networks by Random Matrix Theory

Java software avaialbe upon request.