Full Publication list on Google Scholar.

Selected Publications (*my students and postdocs, # as a corresponding author)

Peng Ni, Neng Huang, Fan Nie, Jun Zhang, Zhi Zhang, Bo Wu*, Lu Bai, Wende Liu, Chuan-Le Xiao, Feng Luo#, Jianxin Wang, “Genome-wide Detection of Cytosine Methylations in Plant from Nanopore Data Using Deep Learning”. Nature Communications, 12, 5976, 2021.

Ying Chen, Fan Nie, Shang-Qian Xie, Ying-Feng Zheng, Qi Dai, Thomas Bray, Yao-Xin Wang, Jian-feng Xing, Zhi-Jian Huang, De-Peng Wang, Li-Juan He, Feng Luo#, Jian-Xin Wang, Yi-Zhi Liu, and Chuan-Le Xiao, “Efficient assembly of Nanopore reads via highly accurate and intact error correction”. Nature Communications, 12, 60, 2021.

Bo Wu*, Qibin Yu, Zhanao Deng, Yongping Duan, Feng Luo#, Frederick Gmitter Jr, A chromosome-level phased genome enabling allele-level studies in sweet orange: a case study on citrus Huanglongbing tolerance, Horticulture Research, 2022, uhac247.

Fei Ding*, Yin Yang, Hongxin Hu, Venkat Krovi, Feng Luo#, “Dual-Level Knowledge Distillation via Knowledge Alignment and Correlation”, IEEE Transactions on Neural Networks and Learning Systems, 2022

Mingqi Li*, Fei Ding, Dan Zhang, Long Cheng, Hongxin Hu, Feng Luo#, “Multi-level Distillation of Semantic Knowledge for Pre-training Multilingual Language Model”, EMNLP 2022, accepted.

Siyuan Shen, Tianjia Shao, Kun Zhou, Chenfanfu Jiang, Feng Luo, Yin Yang. “HoD-Net: High-order Differentiable Deep Neural Networks and Applications”, AAAI, 2022.

Nishant Vishwamitra, Hongxin Hu, Feng Luo, Long Cheng. “Towards Understanding and Detecting Cyberbullyingin Real-world Images”, Proceedings of the Network and Distributed System Security Symposium (NDSS) 2021.

Fei Ding*, Hongda Li, Feng Luo#, Hongxin Hu, Long Chen, Hai Xiao, Rong Ge. “DeepPower: Non-intrusive and Deep Learning-based Detection of IoT Malware Using Power Side Channels”, Proceedings of the 15th ACM Asia Conference on Computer and Communications Security (Asia CCS 20), pp. 33-46, October 2020.

Rajandeep S. Sekhon, Christopher Saski, Rohit Kumar, Barry S. Flinn, Feng Luo, Timothy M. Beissinger, Arlyn J. Ackerman, Matthew W. Breitzman, William C. Bridges, Natalia de Leon, Shawn M. Kaeppler. “Integrated Genome-Scale Analysis Identifies Novel Genes and Networks Underlying Senescence in Maize”. Plant Cell, 31(9):1968-1989, 2019.

Peng Ni, Neng Huang, Zhi Zhang, De-Peng Wang, Fan Liang, Yu Miao, Chuan-Le Xiao, Feng Luo, Jianxin Wang, “DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning”, Bioinformatics, 35(22), 4586-4595, 2019.

Chuan-Le Xiao, Song Zhu, Minghui He, De Chen, Qian Zhang, Ying Chen, Guoliang Yu, Jinbao Liu, Shang-Qian Xie, Feng Luo, Zhe Liang, De-Peng Wang, Xiao-Chen Bo, Xiao-Feng Gu, Kai Wang, Guang-Rong Yan, “N6-Methyladenine DNA Modification in the Human Genome”, Molecular Cell, Volume 71, Issue 2, page 306-319.e7, 2018.

Chengqian Lu, Mengyun Yang, Feng Luo, Fang-Xiang Wu, Min Li, Yi Pan, Yaohang Li, Jianxin Wang. “Prediction of lncRNA-disease associations based on inductive matrix completion”, Bioinformatics, 34(19), 3357-3364, 2018.

Chuan-Le Xiao, Ying Chen, Shang-Qian Xie, Kai-Ning Chen, Yan Wang, Yue Han, Feng Luo#, Zhi Xie. “MECAT: fast mapping, error correction, de novo assembly for single-molecule sequencing reads”, Nature Methods, 14(11):1072-1074, 2017. (2016 Impact factor: 25.062).

Pengfie Xuan*, Walter B. Ligon, Pradip K Srimani, Rong Ge and Feng Luo#. “Accelerating big data analytics on HPC clusters using two-level storage”, Parallel Computing, 61, 18-34, 2017.

Yunsheng Wang*, Lijuan Zhou, Xiaoyue Yu, Ed Stover, Feng Luo#, and Yongping Duan. “Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance”, Frontiers in Plant Science, 7: 933, 2016.

Ye Deng, Yihuei Jiang, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou. “Molecular Ecological Network Analyses”, BMC Bioinformatics, 13:113, 2012.

Feng Luo#, Bo Li*, Xiu-Feng Wan, Richard H. Scheuermann. “Core and periphery structures in protein interaction networks”. BMC Bioinformatics, 10 (Suppl 4):S8, 2009. Among Top 10 most viewed BMC bioinformatics articles in last year reported in July 2011.

Jizhong Zhou, Ye Deng, Feng Luo, Zhili He, Yunfeng Yang. “Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2”. mBio 2(4):e00122-11, 2011.

Jizhong Zhou, Ye Deng, Feng Luo, Zhili He, Qichao Tu, Xiaoyang Zhi. “Functional molecular ecological networks”. mBio, 1(4):e00169-10, 2010.

Feng Luo, Yunfeng Yang, Jianxin Zhong, Haichun Gao, Latifur Khan, Dorothea K. Thompson, Jizhong Zhou. Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory”. BMC Bioinformatics 8:299, 2007.

Feng Luo#, Yunfeng Yang, Chin-Fu Chen, Roger Chang, Jizhong Zhou, Richard Scheuermann. “Modular Organization of Protein Interaction Network”. Bioinformatics, 23(2): 207-214, 2007.

Feng Luo, Latifur Khan, I-Ling Yen, Farokh Bastani, Jizhong Zhou. “A Dynamical Growing Self-Organizing Tree (DGSOT) For Hierarchical Clustering Gene Expression Profiles”. Bioinformatics, Volume 20, Issue 16, 2605-2617, 2004.