(*my students and postdocs, # as a corresponding author)

Journal Papers

51. Peng Ni, Neng Huang, Zhi Zhang, De-Peng Wang, Fan Liang, Yu Miao, Chuan-Le Xiao, Feng Luo, Jianxin Wang, “DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning”, Bioinformatics, Accepted.

50. Xingyu Liao, Min Li, You Zou, Fangxiang Wu, Yi Pan, Feng Luo, Jianxin Wang, “Improving de novo assembly based on read classification”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, Accepted.

49. Tao Li, Xiankai Zhang, Feng Luo, Fangxiang Wu and Jianxin Wang, “MultiMotifMaker: a multi-thread tool for identifying DNA methylation motifs from Pacbio reads”, IEEE/ACM Transactions on Computational Biology and Bioinformatics, Accepted.

48. Chuan-Le Xiao, Shang-Qian Xie, Qing-Biao Xie, Zhao-Yu Liu, Jian-Feng Xing, Kai-Kai Ji, Jun Tao, Liang-Ying Dai, and Feng Luo#, “N6-Methyladenine DNA modification in Xanthomonas oryzae pv. oryzicola genome”, Scientific reports, 8:16272, 2018.

47. Chuan-Le Xiao, Song Zhu, Minghui He, De Chen, Qian Zhang, Ying Chen, Guoliang Yu, Jinbao Liu, Shang-Qian Xie, Feng Luo, Zhe Liang, De-Peng Wang, Xiao-Chen Bo, Xiao-Feng Gu, Kai Wang, Guang-Rong Yan, “N6-Methyladenine DNA Modification in the Human Genome”, Molecular Cell, Volume 71, Issue 2, page 306-319.e7, 2018.

46. Chengqian Lu, Mengyun Yang, Feng Luo, Fang-Xiang Wu, Min Li, Yi Pan, Yaohang Li, Jianxin Wang. “Prediction of lncRNA-disease associations based on inductive matrix completion”, Bioinformatics, 34(19), 3357-3364, 2018.

45. Clemer Abad, Melissa M. Cook, Lei Cao, Julie R. Jones, Nalini R. Rao, Lynn Dukes-Rimsky, Rini Pauly, Cindy Skinner, Yunsheng Wang*, Feng Luo, Roger E. Stevenson, Katherina Walz and Anand K. Srivastava, “A Rare De Novo RAI1 Gene Mutation Affecting BDNF-Enhancer-Driven Transcription Activity Associated with Autism and Atypical Smith-Magenis Syndrome Presentation”, Biology 2018, 7, 31.

44. Xiao-Lin Chen, Xin Xie, Liye Wu, Caiyun Liu, Lirong Zeng, Xueping Zhou, Feng Luo, Guo-Liang Wang, Wende Liu. “Proteomic analysis of ubiquitinated proteins in rice (Oryza sativa) after treatment with pathogen-associated molecular pattern (PAMP) elicitors”, Frontiers in Plant Science, Vol 9, 1064, 2018.

43. Chuan-Le Xiao, Ying Chen, Shang-Qian Xie, Kai-Ning Chen, Yan Wang, Yue Han, Feng Luo#, Zhi Xie. “MECAT: fast mapping, error correction, de novo assembly for single-molecule sequencing reads”, Nature Methods, 14(11):1072-1074, 2017. (2016 Impact factor: 25.062).

42. Yingying Li, Wu Chen, Yunsheng Wang*, Kun Luo, Yue Li, Lianyang Bai, Feng Luo#. “Identifying and sequencing a Mycobacterium sp. strain F4 as a potential bioremediation agent for quinclorac”, PLOS ONE, 12(10): e0185721, 2017.

41. Melissa M Doud, Yungsheng Wang*, Michelle T Hoffman, Christina L Latza, Weiqi Luo, Cheryl M Armstrong, Tim R Gottwald, Liangying Dai, Feng Luo and Yongping Duan. “Solar thermotherapy reduces the titer of Candidatus Liberibacter asiaticus and enhances canopy growth by altering gene expression profiles in HLB-affected citrus plants”, Horticulture Research, 4, 17054, 2017.

40. Pengfie Xuan*, Walter B. Ligon, Pradip K Srimani, Rong Ge and Feng Luo#. “Accelerating big data analytics on HPC clusters using two-level storage”, Parallel Computing, 61, 18-34, 2017.

39. Yunsheng Wang*, Lijuan Zhou, Xiaoyue Yu, Ed Stover, Feng Luo#, and Yongping Duan. “Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance”, Frontiers in Plant Science, 7: 933, 2016.

38. Yuan Chen, Ying Zeng, Feng Luo#, Zheming Yuan. “A New Algorithm to Optimize Maximal Information Coefficient”, PLoS ONE, 11(6):e0157567, 2016.

37. Nan Zhao, Brigitte E. Martin, Chun-Kai Yang, Feng Luo, and Xiu-Feng Wan. “Association analyses of large-scale glycan microarray data reveal novel host-specific substructures in influenza A virus binding glycans”, Scientific Reports, 5:15778, 2015.

36. Zhao Chen, Hongye Wang, Claudia Ionita, Feng Luo, and Xiuping Jiang. “Effects of Chicken Litter Storage Time and Ammonia Content on Thermal Resistance of Desiccation-Adapted Salmonella spp.”, Applied and environmental microbiology, volume 81, issue 19, 6883-6889, 2015.

35. Yunsheng Wang*, Zhenchuan Mao, Jin Yan, Xinyue Cheng, Feng Liu, Luo Xiao, Liangying Dai, Feng Luo, and Bingyan Xie. “Identification of MicroRNAs in Meloidogyne incognita Using Deep Sequencing”. PloS ONE, 10(8):e0133491, 2015.

34. Yunsheng Wang*, Lijuan Zhou, Dazhi Li, Liangying Dai, Amy Lawton-Rauh, Pradip K. Srimani, Yongping Duan, Feng Luo#. “Genome-wide Comparative Analysis Reveals Similar Types of NBS Genes in Hybrid Citrus sinensis Genome and Original Citrus clementina Genome and Provides New Insights into Non-TIR NBS Genes”, PLoS ONE, 10(3): e0121893, 2015.

33. Adel Dayarian, Roberto Romero, Zhiming Wang*, Michael Biehl5, Erhan Bilal6, Sahand Hormoz, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Gyan Bhanot, Feng Luo# and Adi L. Tarca. “Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge”. Bioinformatics, Vol. 31 no. 4,pages 462–470, 2015.

32. Min Liu, Kun Luo, Yunsheng Wang*, Aiping Zeng, Xiaomao Zhou, Feng Luo#, Lianyang Bai, “Isolation, Identification and Characteristics of an Endophytic Quinclorac Degrading Bacterium Bacillus megaterium Q3”, PLoS ONE, 9(9):e108012, 2014.

31. Qiliang Wang, Onur G Apul, Pengfei Xuan*, Feng Luo, Tanju Karanfil. “Development of a 3D QSPR model for adsorption of aromatic compounds by carbon nanotubes: comparison of multiple linear regression, artificial neural network and support vector machine”. RSC Advances, volume 3, issue 46, 23924-23934, 2013.

30. Scott M. Gibson, Stephen P. Ficklin, Sven Isaacson, Feng Luo, Frank A. Feltus, Melissa C. Smith. “Massive-Scale Gene Co-expression Network Construction and Robustness Testing Using Random Matrix Theory”. PLoS ONE, 8(2):e55871, 2013.

29. Anna Blenda, David Fang, Jean-francois Rami, Olivier Garsmeur, Feng Luo, Jean-Marc Lacape. “A high-density consensus map of tetraploid cotton that integrates multiple component maps through molecular marker redundancy check”. PLoS ONE, 7(9):e45739, 2012.

28. Jacob B. Spangler, Stephen P. Ficklin, Feng Luo, Michael Freeling, F. Alex Feltus. “Conserved Non-Coding Regulatory Signatures in Arabidopsis Co-Expressed Gene Modules”. PLoS ONE, 7(9):e45041, 2012.

27. Yuehua Zhang*, Bo Li*, Pradip K Srimani, Xuewen Chen, Feng Luo#. “Predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using short polypeptide clusters”. Proteome Science, 10 (Suppl 1):S4, 2012.

26. Ye Deng, Yihuei Jiang, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou. “Molecular Ecological Network Analyses”, BMC Bioinformatics, 13:113, 2012.

25. Pengfei Xuan*, Yuehua Zhang*, Tzuen-rong Jeremy Tzeng, Xiu-Feng Wan, Feng Luo#. “A quantitative structure-activity relationship (QSAR) study on glycan array data to determine the specificities of glycan binding proteins”. Glycobiology, volume 22, issue 4, 552-560, 2012.

24. Xumeng Li*, F Alex Feltus, Xiaoqian Sun, James Z. Wang, Feng Luo#. “Identifying differentially expressed genes in cancer patients using a non-parameter Ising model”. PROTEOMICS, volume 11, issue 19, p3845-3852, 2011.

23. Jizhong Zhou, Ye Deng, Feng Luo, Zhili He, Yunfeng Yang. “Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2”. mBio 2(4):e00122-11, 2011.

22. Randhir Singh, Jinkyung Kim, Marion W. Shepherd Jr, Feng Luo and Xiuping Jiang. “Determining thermal inactivation of Escherichia coli O157:H7 in fresh compost by simulating early phases of composting process”. Applied and Environmental Microbiology, vol. 77, p4126-4135, 2011.

21. Bo Li*, Weiguo Cao, Jizhong Zhou, Feng Luo#. “Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions”. BMC Systems Biology, 5:73, 2011.

20. Jizhong Zhou, Ye Deng, Feng Luo, Zhili He, Qichao Tu, Xiaoyang Zhi. “Functional molecular ecological networks”. mBio, 1(4):e00169-10, 2010.

19. Stephen P. Ficklin, Feng Luo, F. Alex Feltus. “The association of multiple interacting genes with specific phenotypes in rice (Oryza Sativa) using gene co-expression networks”. Plant Physiology, 154 (1): p. 13-24, 2010.

18. Randhir Singh, Xiuping Jiang, Feng Luo. “Thermal Inactivation of Heat-shocked Escherichia coli O157:h7, Salmonella and Listeria monocytogenes in Dairy Compost”. Journal of Food Protection. Volume 73, Number 9, pp. 1633-1640(8), 2010.

17. Aifen Zhou, Zhili He, Alyssa M. Redding-Johanson, Aindrila Mukhopadhyay, Christopher L. Hemme, Marcin P. Joachimiak, Feng Luo, Ye Deng, Kelly S. Bender, Qiang He, Jay D. Keasling, David A. Stahl, Matthew W. Fields, Terry C. Hazen, Adam P. Arkin, Judy D. Wall, Jizhong Zhou. “Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough”. Environmental microbiology. Volume 12, Number 10, pp. 2645-2657(13), 2010.

16. Roger L. Chang, Feng Luo, Stuart Johnson and Richard H. Scheuermann. “Deterministic Graph-Theoretic Algorithm for Detecting Modules in Biological Interaction Networks”. International Journal of Bioinformatics Research and Applications (IJBRA). Vol. 6, No. 2, 101-119, 2010. 

15. Jinkyung Kim, Feng Luo, and Xiuping Jiang. “Factors Impacting the Regrowth of Escherichia coli O157:H7 in Dairy Manure Compost”. Journal of Food Protection, Volume 72, Number 7, pp. 1576-1584, 2009.

14. Feng Luo#, Bo Li*, Xiu-Feng Wan, Richard H. Scheuermann. “Core and periphery structures in protein interaction networks”. BMC Bioinformatics, 10 (Suppl 4):S8, 2009. Among Top 10 most viewed BMC bioinformatics articles in last year reported in July 2011.

13. Yunfeng Yang, Daniel P. Harris, Feng Luo, Marcin Joachimiak, Liyou Wu, Paramvir Dehal, Janet Jacobsen, Zamin Yang, Haichun Gao, Adam P. Arkin, Anthony V. Palumbo and Jizhong Zhou. “Snapshot of Iron Response in Shewanella oneidensis by Gene Network Reconstruction”. BMC Genomics, 10:131, 2009.

12. Xiu-Feng Wan, Tung Nguyen, C. Todd Davis, Catherine B. Smith, Zi-Ming Zhao, Margaret Carrel, Kenjiro Inui, Hoa T. Do, Duong T. Mai, Samadhan Jadhao, Amanda Balish, Feng Luo, Michael Emch, Yumiko Matsuoka, Nancy J. Cox, Cam V. Nguyen, Alexander Klimov, and Ruben O. Donis. “Evolution of Highly Pathogenic H5N1 Avian Influenza Viruses in Vietnam between 2001 and 2007: Introduction, Reassortment, and Emergence of Novel Genotypes”, PLOS One, 3(10): e3462, 2008.

11. Feng Luo#, James Z. Wang, Eric Promislow. “Exploring Local Community Structures in Large Networks”, Web Intelligence and Agent Systems, vol. 6, Number 4, 387-400, 2008.

10. Yunfeng Yang, Daniel P. Harris, Feng Luo, Liyou Wu, Andrea B. Parsons, Anthony V. Palumbo and Jizhong Zhou. “Characterization of the Shewanella oneidensis Fur Gene: Roles in Iron and Acid Tolerance Response”. BMC Genomics, 9, Supplement 1:S11, 2008.

9. Xiu-Feng Wan, Guorong Chen, Feng Luo, Michael Emch and Ruben Donis, “A Quantitative Genotype Algorithm Reflecting H5N1 Avian Influenza Niches”, Bioinformatics, 23(18):2368-2375, 2007.

8. Feng Luo, Yunfeng Yang, Jianxin Zhong, Haichun Gao, Latifur Khan, Dorothea K. Thompson, Jizhong Zhou. Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory”. BMC Bioinformatics 8:299, 2007.

7. Feng Luo#, Yunfeng Yang, Chin-Fu Chen, Roger Chang, Jizhong Zhou, Richard Scheuermann. “Modular Organization of Protein Interaction Network”. Bioinformatics, 23(2): 207-214, 2007.

6. Feng Luo, Jianxin Zhong, Yunfeng Yang, Richard Scheuermann, Jizhong Zhou. “Application of Random Matrix Theory to Biological Networks”. Physics Letters A, Volume 357, Issue 6, 420-423, 2006.

5. Feng Luo, Yunfeng Yang, Jianxin Zhong, Jizhong Zhou. “Application of Random Matrix Theory to Microarray Data for Discovering Functional Gene Modules”. Physical Review E, 73, 031924, 2006.

4. Latifur Khan, Feng Luo. “Hierarchical Clustering of Complex Data”. Special issue of International Journal on Artificial Intelligence Tools, Vol. 14, No. 5, 791-809, 2005.

3. Feng Luo, Latifur Khan, I-Ling Yen, Farokh Bastani, Jizhong Zhou. “A Dynamical Growing Self-Organizing Tree (DGSOT) For Hierarchical Clustering Gene Expression Profiles”. Bioinformatics, Volume 20, Issue 16, 2605-2617, 2004.

2. Gang Zhao, Feng Luo, Yong-xiang Ma. “Synthesis and characterization of organometallic thio-Schiff bases and their copper (II) chelates”. Transition Metal Chemistry (Dordrecht, Netherlands), 19(6), 567-570, 1994.

1. Gang Zhao, Feng Luo, Yan Cao, Shikui Liu. “Synthesis and characterization of ferrocene-containing thio-Schiff bases and their dicyclopentadienyltitanium(IV) complexes”.  Synthesis and Reactivity in Inorganic and Metal-Organic Chemistry, 24(4), 691-701, 1994.

Refereed Conference Papers

26. Yunpei Xu, Hongdong Li, Yi Pan, Feng Luo and Jianxin Wang, “BioRank: A similarity assessment method for single cell clustering”. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp 157-162, Madrid Spain, December 2018.

25. Xiang Zhang*, Nishant Vishwamitra, Hongxin Hu, Feng Luo#, “CrescendoNet: A Simple Deep Convolutional Neural Network with Ensemble Behavior”, in 17th International Conference on Machine Learning and Applications (ICMLA), 2018.

24. Pengfei Xuan*, Feng Luo#, Rong Ge, Pradip K Srimani. “Dynamic Management of In-memory Storage for Efficiently Integrating Compute- and Data-intensive Computing on HPC Systems”. 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid), 549-558, Madrid Spain, May 2017.

23. Li Yan, Haiying Shen, Juanjuan Zhao, Chengzhong Xu, Feng Luo, Chenxi Qiu, “CatCharger: Deploying Wireless Charging Lanes in a Metropolitan Road Network through Categorization and Clustering of Vehicle Traffic”. IEEE International Conference on Computer Communications (InfoCom), Atlanta USA, May 2017. (Acceptance rate 20.93%).

22. Nishant Vishwamitra, Xiang Zhang*, Jonathan Tong*, Hongxin Hu, Feng Luo, Robin Kowalski, and Joseph Mazer. “MCDefender: Toward Effective Cyberbullying Defense in Mobile Online Social Networks”. In Proceedings of the 3rd ACM on International Workshop on Security And Privacy Analytics (IWSPA '17), 37-42, New York USA, March, 2017.

21. Yuehua Zhang*, Pengfei Xuan*, Yunsheng Wang, Pradip K. Srimani, Feng Luo#. “A de novo Genome Assembler based on MapReduce and Bi-directed de Bruijn Graph”. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp 65-71, Shenzhen China, December 2016.

20. Xiang Zhang*, Jonathan Tong*, Nishant Vishwamitra, Elizabeth Whittake, Joseph P. Mazer, Robin Kowalski, Jamie Macbeth, Edward Dillon, Hongxin Hu, Feng Luo#. “Cyberbullying Detection with a Pronunciation Based Convolutional Neural Network”, in 15th International Conference on Machine Learning and Applications (ICMLA), pp740-745, Anaheim USA, December 2016.

19. Feng Luo and Pradip k. Srimani. “New Biology Inspired Anonymous Distributed Algorithms to compute Dominating and Total Dominating Sets in Network Graphs”, 18th Workshop on Advances in Parallel and Distributed Computational Models (APDCM), pp 517-524, Chicago USA, May 2016.

18. Pengfei Xuan*, Jeffrey Denton, Pradip K. Srimani, Rong Ge, and Feng Luo#. 2015. “Big data analytics on traditional HPC infrastructure using two-level storage”. In Proceedings of the 2015 International Workshop on Data-Intensive Scalable Computing Systems (DISCS), Austin USA, November 2015.

17. Heshan Sun, Feng Luo, Jake London, Xiong Jiao. “Fashionable Technology, Fashion Waves, and Post-Adoption Regret and Satisfaction”. Thirty Fifth International Conference on Information Systems (ICIS), Auckland New Zealand, December 2014.

16. Sufeng Niu, Guangyu Yang*, Nilim Sarma, Pengfei Xuan*, Melissa C. Smith, Pradip Srimani, Feng Luo#. “Combining Hadoop and GPU to Preprocess Large Affymetrix Microarray Data”. IEEE International conference on Big Data (IEEE BigData), pp.692-700, Washington DC USA, October 2014.

15. Lu Zhang*, Yunsheng Wang*, Pengfei Xuan*, Alexander Duvall*, Jonathan Lowe*, Yanyan Wang*, Arvind Subramanian*, Pradip K Srimani, Feng Luo#, Yongping Duan. “Sesame: A new bioinformatics semantic workflow design system”. 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 504-508, Shanghai China, December 2013.

14. Aditya Sriram*, Feng Luo#. “O-linked Glycosylation Site Prediction Using Ensemble of Graphical Models”. 11th International Conference on Machine Learning and Applications (ICMLA), 563-568, Boca Raton USA, December 2012.

13. Wei Shi, Feng Luo, Pradip Srimani. “A New Hierarchical Structure of Star Graphs and Applications”. Distributed Computing and Internet Technology, Lecture Notes in Computer Science, Volume 7154, 2012, pp 267-268, 2012.

12. Bo Li*, Yuehua Zhang*, Pradip K. Srimani, Feng Luo#. “Predicting Yeast Synthetic Lethal Genetic Interactions using short polypeptide clusters”. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 185-190, Atlanta USA, November 2011.

11. Xumeng Li*, Xiaoqian Sun, F. Alex Feltus, James Z. Wang, Feng Luo#. “A non-parameter Ising model for network-based identification of differentially expressed genes in recurrent breast cancer patients”. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 214-217, Hong Kong China, December 2010.

10. Bo Li*, Feng Luo#, James Z. Wang, F. Alex Feltus, Jizhong Zhou. “Effectively integrating information content and structural relationship to improve gene ontology based semantic similarity between proteins”. The 2010 International Conference on Bioinformatics & Computational Biology (BioComp), 166-172, Los Vegas USA, July 2010

9. Bo Li*, Feng Luo#. “Predicting yeast synthetic lethal genetic interactions using protein domains”. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 43-47, Washington DC USA, November 2009.

8. Feng Luo#, Thomas Grindinger*, Xiu-Feng Wan, Richard H. Scheuermann. “Exploring core/periphery structures in protein interaction networks provides structure-property relation insights”. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 179-186, Philadelphia USA, November 2008.

7. Roger L. Chang, Feng Luo, Stuart Johnson and Richard H. Scheuermann. “Deterministic Graph-Theoretic Algorithm for Detecting Modules in Biological Interaction Networks”. The 5th Annual Biotechnology and Bioinformatics Symposium (BIOT), 1-10, Arlington, Texas, October 2008.

6. Yunfeng Yang, Daniel P. Harris, Feng Luo, Liyou Wu, Andrea B. Parsons, Anthony V. Palumbo and Jizhong Zhou. “Physiological and Transcriptomic Analyses to Characterize the Function of Fur and Iron Response in Shewanella oneidensis”. The 2007 International Conference on Bioinformatics & Computational Biology (BioComp), 707-713, Las Vegas, USA, June 2007.

5. Feng Luo#, James Z. Wang, Eric Promislow. “Exploring Local Community Structures in Large Networks”, IEEE/WIC/ACM International Conference on Web Intelligence (WI 2006), 233-239, Hong Kong China, December 2006.

4. Feng Luo, Richard Scheuermann. “Detecting Functional Modules from Protein Interaction Networks”. Symposium of Computations in Bioinformatics and Bioscience (SCBB), 123-130, Hangzhou China, June 2006.

3. Feng Luo, Kun Tang and Latifur Khan. “Hierarchical Clustering of Gene Microarray Expression Data”. Proc. of Workshop on Clustering High Dimensional Data and its Applications (Conjunction with SDM), 1-10, San Francisco USA, May 2003.

2. Feng Luo, Kun Tang and Latifur Khan.  “Hierarchical Clustering of Gene Expression Data”. Proc. of the 3rd IEEE Symposium of Bioinformatics and Bioengineer (BIBE) 2003, 328-335, Washington DC USA, March 2003.

1. Latifur Khan, Feng Luo. “Ontology Construction for Information Selection”, Proc. of the 14th IEEE International Conference on Tools with Artificial Intelligence (ICTAI), 122-127, Crystal City USA, November 2002.

Book Chapters

2. Feng Luo, Pradip K. Srimani and Jizhong Zhou. “APPLICATION OF RANDOM MATRIX THEORY TO ANALYZE BIOLOGICAL DATA”. in Handbook of Data Intensive Computing, Part 4, 711-732. Edited by Borko Furht, Armando Escalante, LexisNexis, Springer, New York, 2011.

1. Feng Luo, Latifur Khan. “Data complexity in clustering analysis of gene microarray expression profiles”. in Complexity in Pattern Recognition Edited by Dr. Mitra Basu and Dr. Tin Kam Ho, 217-239, Springer Verlag, 2006.